diff --git a/extensions/schema-compare/src/dialogs/schemaCompareDialog.ts b/extensions/schema-compare/src/dialogs/schemaCompareDialog.ts
index 99be22f5d6..dd89d4c01a 100644
--- a/extensions/schema-compare/src/dialogs/schemaCompareDialog.ts
+++ b/extensions/schema-compare/src/dialogs/schemaCompareDialog.ts
@@ -350,6 +350,7 @@ export class SchemaCompareDialog {
 					break;
 				case mssql.SchemaCompareEndpointType.Project:
 					targetComponents.push(this.targetProjectFilePathComponent);
+					targetComponents.push(this.targetProjectStructureComponent);
 					break;
 			}