Fix conda virtual environment paths in notebooks (#20438)

This commit is contained in:
Cory Rivera
2022-08-23 13:34:06 -07:00
committed by GitHub
parent fa6ffb6ce6
commit 52290a796d
4 changed files with 82 additions and 62 deletions

View File

@@ -63,7 +63,6 @@ export interface IJupyterServerInstallation {
getInstalledCondaPackages(): Promise<PythonPkgDetails[]>;
uninstallCondaPackages(packages: PythonPkgDetails[]): Promise<void>;
usingConda: boolean;
getCondaExePath(): string;
executeBufferedCommand(command: string): Promise<string>;
executeStreamedCommand(command: string): Promise<void>;
/**
@@ -74,6 +73,7 @@ export interface IJupyterServerInstallation {
installPipPackages(packages: PythonPkgDetails[], useMinVersionDefault: boolean): Promise<void>;
uninstallPipPackages(packages: PythonPkgDetails[]): Promise<void>;
pythonExecutable: string;
condaExecutable: string | undefined;
pythonInstallationPath: string;
installedPythonVersion: string;
}
@@ -113,8 +113,8 @@ export class JupyterServerInstallation implements IJupyterServerInstallation {
private _pythonInstallationPath: string;
private _pythonExecutable: string;
private _condaExecutable: string | undefined;
private _usingExistingPython: boolean;
private _usingConda: boolean;
private _installedPythonVersion: string;
private _upgradeInProcess: boolean = false;
@@ -154,7 +154,6 @@ export class JupyterServerInstallation implements IJupyterServerInstallation {
this._pythonInstallationPath = JupyterServerInstallation.getPythonInstallPath();
this._usingExistingPython = JupyterServerInstallation.getExistingPythonSetting();
}
this._usingConda = false;
this._installInProgress = false;
this._kernelSetupCache = new Map<string, boolean>();
@@ -360,10 +359,9 @@ export class JupyterServerInstallation implements IJupyterServerInstallation {
let pythonBinPathSuffix = process.platform === constants.winPlatform ? '' : 'bin';
this._pythonExecutable = JupyterServerInstallation.getPythonExePath(this._pythonInstallationPath);
this._condaExecutable = await JupyterServerInstallation.getCondaExePath(this._pythonInstallationPath);
this.pythonBinPath = path.join(this._pythonInstallationPath, pythonBinPathSuffix);
this._usingConda = this.isCondaInstalled();
// Store paths to python libraries required to run jupyter.
this.pythonEnvVarPath = process.env['PATH'];
@@ -373,7 +371,7 @@ export class JupyterServerInstallation implements IJupyterServerInstallation {
let pythonScriptsPath = path.join(this._pythonInstallationPath, 'Scripts');
this.pythonEnvVarPath = pythonScriptsPath + delimiter + this.pythonEnvVarPath;
if (this._usingConda) {
if (this.usingConda) {
this.pythonEnvVarPath = [
path.join(this._pythonInstallationPath, 'Library', 'mingw-w64', 'bin'),
path.join(this._pythonInstallationPath, 'Library', 'usr', 'bin'),
@@ -650,12 +648,10 @@ export class JupyterServerInstallation implements IJupyterServerInstallation {
public async getInstalledCondaPackages(): Promise<PythonPkgDetails[]> {
try {
if (!this.isCondaInstalled()) {
if (!this.condaExecutable) {
return [];
}
let condaExe = this.getCondaExePath();
let cmd = `"${condaExe}" list --json`;
let cmd = `"${this.condaExecutable}" list --json`;
let packagesInfo = await this.executeBufferedCommand(cmd);
let packages: PythonPkgDetails[] = [];
@@ -673,8 +669,8 @@ export class JupyterServerInstallation implements IJupyterServerInstallation {
}
}
public installCondaPackages(packages: PythonPkgDetails[], useMinVersionDefault: boolean): Promise<void> {
if (!packages || packages.length === 0) {
public async installCondaPackages(packages: PythonPkgDetails[], useMinVersionDefault: boolean): Promise<void> {
if (!this.condaExecutable || !packages || packages.length === 0) {
return Promise.resolve();
}
@@ -683,23 +679,24 @@ export class JupyterServerInstallation implements IJupyterServerInstallation {
const pkgVersionSpecifier = pkg.installExactVersion ? '==' : versionSpecifierDefault;
return `"${pkg.name}${pkgVersionSpecifier}${pkg.version}"`;
}).join(' ');
let condaExe = this.getCondaExePath();
let cmd = `"${condaExe}" install -c conda-forge -y ${packagesStr}`;
return this.executeStreamedCommand(cmd);
let cmd = `"${this.condaExecutable}" install -c conda-forge -y ${packagesStr}`;
await this.executeStreamedCommand(cmd);
}
public uninstallCondaPackages(packages: PythonPkgDetails[]): Promise<void> {
for (let pkg of packages) {
if (this._requiredPackagesSet.has(pkg.name)) {
this._kernelSetupCache.clear();
break;
public async uninstallCondaPackages(packages: PythonPkgDetails[]): Promise<void> {
if (this.condaExecutable) {
for (let pkg of packages) {
if (this._requiredPackagesSet.has(pkg.name)) {
this._kernelSetupCache.clear();
break;
}
}
}
let condaExe = this.getCondaExePath();
let packagesStr = packages.map(pkg => `"${pkg.name}==${pkg.version}"`).join(' ');
let cmd = `"${condaExe}" uninstall -y ${packagesStr}`;
return this.executeStreamedCommand(cmd);
let packagesStr = packages.map(pkg => `"${pkg.name}==${pkg.version}"`).join(' ');
let cmd = `"${this.condaExecutable}" uninstall -y ${packagesStr}`;
await this.executeStreamedCommand(cmd);
}
}
public async executeStreamedCommand(command: string): Promise<void> {
@@ -714,9 +711,29 @@ export class JupyterServerInstallation implements IJupyterServerInstallation {
return this._pythonExecutable;
}
public getCondaExePath(): string {
return path.join(this._pythonInstallationPath,
process.platform === constants.winPlatform ? 'Scripts\\conda.exe' : 'bin/conda');
public get condaExecutable(): string | undefined {
return this._condaExecutable;
}
public static async getCondaExePath(pythonInstallationPath: string): Promise<string> {
let exeName = process.platform === constants.winPlatform ? 'Scripts\\conda.exe' : 'bin/conda';
let condaPath = path.join(pythonInstallationPath, exeName);
let condaExists = await fs.pathExists(condaPath);
// If conda was not found, then check if we're using a virtual environment
if (!condaExists) {
let pathParts = pythonInstallationPath.split(path.sep);
if (pathParts.length > 1 && pathParts[pathParts.length - 2] === 'envs') {
// The root Anaconda folder is 2 folders above the virtual environment's folder
// Example: Anaconda3\envs\myEnv\python.exe -> Anaconda3\conda.exe
// Docs: https://conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html#creating-an-environment-with-commands
condaPath = path.join(pythonInstallationPath, '..', '..', exeName);
condaExists = await fs.pathExists(condaPath);
}
if (!condaExists) {
condaPath = undefined;
}
}
return condaPath;
}
/**
@@ -727,19 +744,13 @@ export class JupyterServerInstallation implements IJupyterServerInstallation {
}
public get usingConda(): boolean {
return this._usingConda;
return !!this._condaExecutable;
}
public get installedPythonVersion(): string {
return this._installedPythonVersion;
}
private isCondaInstalled(): boolean {
let condaExePath = this.getCondaExePath();
// eslint-disable-next-line no-sync
return fs.existsSync(condaExePath);
}
/**
* Checks if a python executable exists at the "notebook.pythonPath" defined in the user's settings.
*/

View File

@@ -86,7 +86,7 @@ export class LocalCondaPackageManageProvider implements IPackageManageProvider {
}
private async fetchCondaPackage(packageName: string): Promise<IPackageOverview> {
let condaExe = this.jupyterInstallation.getCondaExePath();
let condaExe = this.jupyterInstallation.condaExecutable;
let cmd = `"${condaExe}" search --json ${packageName}`;
let packageResult: string;
try {

View File

@@ -212,8 +212,8 @@ describe('Manage Package Providers', () => {
uninstallCondaPackages: (packages: PythonPkgDetails[]) => { return Promise.resolve(); },
executeBufferedCommand: (command: string) => { return Promise.resolve(''); },
executeStreamedCommand: (command: string) => { return Promise.resolve(); },
getCondaExePath: () => { return ''; },
pythonExecutable: '',
condaExecutable: undefined,
pythonInstallationPath: '',
usingConda: false,
installedPythonVersion: '',

View File

@@ -31,12 +31,12 @@ describe('Jupyter Server Installation', function () {
sinon.restore();
});
it('Getters and setters', async function() {
it('Getters and setters', async function () {
let pythonPath = installation.pythonInstallationPath;
should(pythonPath).be.equal(JupyterServerInstallation.getPythonInstallPath());
});
it('Get pip packages', async function() {
it('Get pip packages', async function () {
// Should return nothing if passed an invalid python path
let fakePath = uuid.v4();
let pkgResult = await installation.getInstalledPipPackages(fakePath);
@@ -73,7 +73,7 @@ describe('Jupyter Server Installation', function () {
should(pkgResult).be.deepEqual(testPackages);
});
it('Install pip package', async function() {
it('Install pip package', async function () {
let commandStub = sinon.stub(utils, 'executeStreamedCommand').resolves();
// Should not execute any commands when passed an empty package list
@@ -103,7 +103,7 @@ describe('Jupyter Server Installation', function () {
should(commandStr.includes('"TestPkg1>=1.2.3" "TestPkg2>=4.5.6"')).be.true();
});
it('Uninstall pip package', async function() {
it('Uninstall pip package', async function () {
let commandStub = sinon.stub(utils, 'executeStreamedCommand').resolves();
let testPackages = [{
@@ -119,16 +119,16 @@ describe('Jupyter Server Installation', function () {
should(commandStr.includes('"jupyter==1.0.0" "TestPkg2==4.5.6"')).be.true();
});
it('Get conda packages', async function() {
it('Get conda packages', async function () {
// Should return nothing if conda is not installed
sinon.stub(fs, 'existsSync').returns(false);
sinon.stub(installation, 'condaExecutable').get(() => undefined);
let pkgResult = await installation.getInstalledCondaPackages();
should(pkgResult).not.be.undefined();
should(pkgResult.length).be.equal(0);
// Should return nothing on error
sinon.restore();
sinon.stub(fs, 'existsSync').returns(true);
sinon.stub(installation, 'condaExecutable').get(() => 'TestCondaPath');
sinon.stub(utils, 'executeBufferedCommand').rejects(new Error('Expected test failure.'));
pkgResult = await installation.getInstalledCondaPackages();
should(pkgResult).not.be.undefined();
@@ -150,16 +150,31 @@ describe('Jupyter Server Installation', function () {
version: '7.8.9',
channel: 'conda'
}];
sinon.stub(fs, 'existsSync').returns(true);
sinon.stub(installation, 'condaExecutable').get(() => 'TestCondaPath');
sinon.stub(utils, 'executeBufferedCommand').resolves(JSON.stringify(testPackages));
pkgResult = await installation.getInstalledCondaPackages();
let filteredPackages = testPackages.filter(pkg => pkg.channel !== 'pypi');
should(pkgResult).be.deepEqual(filteredPackages);
});
it('Install conda package', async function() {
it('Install conda package', async function () {
const testPackages = [{
name: 'TestPkg1',
version: '1.2.3'
}, {
name: 'TestPkg2',
version: '4.5.6'
}];
let commandStub = sinon.stub(utils, 'executeStreamedCommand').resolves();
// Should not execute any commands if conda is not installed
let condaStub = sinon.stub(installation, 'condaExecutable').get(() => undefined);
await installation.installCondaPackages(testPackages, false);
should(commandStub.called).be.false();
condaStub.restore();
sinon.stub(installation, 'condaExecutable').get(() => 'TestCondaPath');
// Should not execute any commands when passed an empty package list
await installation.installCondaPackages(undefined, false);
should(commandStub.called).be.false();
@@ -168,13 +183,6 @@ describe('Jupyter Server Installation', function () {
should(commandStub.called).be.false();
// Install package using exact version
let testPackages = [{
name: 'TestPkg1',
version: '1.2.3'
}, {
name: 'TestPkg2',
version: '4.5.6'
}];
await installation.installCondaPackages(testPackages, false);
should(commandStub.calledOnce).be.true();
let commandStr = commandStub.args[0][0] as string;
@@ -187,7 +195,8 @@ describe('Jupyter Server Installation', function () {
should(commandStr.includes('"TestPkg1>=1.2.3" "TestPkg2>=4.5.6"')).be.true();
});
it('Uninstall conda package', async function() {
it('Uninstall conda package', async function () {
sinon.stub(installation, 'condaExecutable').get(() => 'TestCondaPath');
let commandStub = sinon.stub(utils, 'executeStreamedCommand').resolves();
let testPackages = [{
@@ -203,29 +212,29 @@ describe('Jupyter Server Installation', function () {
should(commandStr.includes('"jupyter==1.0.0" "TestPkg2==4.5.6"')).be.true();
});
it('Get required packages test - Undefined argument', async function() {
it('Get required packages test - Undefined argument', async function () {
let packages = installation.getRequiredPackagesForKernel(undefined);
should(packages).not.be.undefined();
should(packages.length).be.equal(0);
});
it('Get required packages test - Fake kernel', async function() {
it('Get required packages test - Fake kernel', async function () {
let packages = installation.getRequiredPackagesForKernel('NotARealKernel');
should(packages).not.be.undefined();
should(packages.length).be.equal(0);
});
it('Get required packages test - Python 3 kernel', async function() {
it('Get required packages test - Python 3 kernel', async function () {
let packages = installation.getRequiredPackagesForKernel(python3DisplayName);
should(packages).be.deepEqual([requiredJupyterPkg]);
});
it('Get required packages test - Powershell kernel', async function() {
it('Get required packages test - Powershell kernel', async function () {
let packages = installation.getRequiredPackagesForKernel(powershellDisplayName);
should(packages).be.deepEqual([requiredJupyterPkg, requiredPowershellPkg]);
});
it('Get required packages test - Spark kernels', async function() {
it('Get required packages test - Spark kernels', async function () {
let packages = installation.getRequiredPackagesForKernel(pysparkDisplayName);
should(packages).be.deepEqual(requiredSparkPackages, 'Unexpected packages for PySpark kernel.');
@@ -236,7 +245,7 @@ describe('Jupyter Server Installation', function () {
should(packages).be.deepEqual(requiredSparkPackages, 'Unexpected packages for Spark R kernel.');
});
it('Install python test - Run install while Python is already running', async function() {
it('Install python test - Run install while Python is already running', async function () {
// Should reject overwriting an existing python install if running on Windows and python is currently running.
if (process.platform === winPlatform) {
sinon.stub(utils, 'executeBufferedCommand').resolves('python.exe');
@@ -250,7 +259,7 @@ describe('Jupyter Server Installation', function () {
}
});
it('Install python test - Run install with existing Python instance', async function() {
it('Install python test - Run install with existing Python instance', async function () {
let installSettings: PythonInstallSettings = {
installPath: `${process.env['USERPROFILE']}\\ads-python`,
existingPython: true,
@@ -258,7 +267,7 @@ describe('Jupyter Server Installation', function () {
};
sinon.stub(utils, 'exists').resolves(true);
sinon.stub(fs, 'existsSync').returns(false);
sinon.stub(fs, 'pathExists').resolves(false);
sinon.stub(utils, 'executeBufferedCommand').resolves(`${installSettings.installPath}\\site-packages`);
// Both of these are called from upgradePythonPackages